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Submissions from 2014

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Experimental and computational investigation of the patient-specific abdominal aortic aneurysm pressure field., Raúl Antón, C-Y Chen, Ming-yang Hung, Ender A. Finol, and Kerem Pekkan

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Localizing and extracting filament distributions from microscopy images., S. Basu, C. Liu, and Gustavo K. Rohde

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Extracorporeal membrane oxygenation with subclavian artery cannulation in awake patients with pulmonary hypertension., Mauer Biscotti, Emily Vail, Keith E. Cook, Bessie Kachulis, Erika B. Rosenzweig, and Matthew Bacchetta

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Effects of intraluminal thrombus on patient-specific abdominal aortic aneurysm hemodynamics via stereoscopic particle image velocity and computational fluid dynamics modeling., Chia-Yuan Chen, Raúl Antón, Ming-yang Hung, Prahlad G. Menon, Ender A. Finol, and Kerem Pekkan

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Engineered skeletal muscle tissue for soft robotics: fabrication strategies, current applications, and future challenges., Rebecca M. Duffy and Adam W. Feinberg

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A computer-based automated algorithm for assessing acinar cell loss after experimental pancreatitis., John F. Eisses, Amy W. Davis, Akif Burak Tosun, Zachary R. Dionise, Cheng Chen, John A. Ozolek, Gustavo K. Rohde, and Sohail Z. Husain

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Computational biorheology of human blood flow in health and disease., Dmitry A. Fedosov, Ming Dao, George Em Karniadakis, and Subra Suresh

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Photoactive Electrospun Fibers for Inducing Cell Death, Doris Gabriel, Tzahi Cohen-Karni, David Huang, Homer H. Chiang, and Daniel S. Kohane

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Cellular Processing of Single Wall Carbon Nanotubes, Brian D. Holt

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Cancer diagnosis by nuclear morphometry using spatial information (.), Hu Huang, Akif Burak Tosun, Jia Guo, Cheng Chen, Wei Wang, John A. Ozolek, and Gustavo K. Rohde

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Analysis of Pressure Head-Flow Loops of Pulsatile Rotodynamic Blood Pumps, Silje E. Jahren, Gregor Ochsner, Fangjun Shu, Raffael Amacher, James F. Antaki, and Stijn Vandenberghe

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Nano- and Microstructured ECM and Biomimetic Scaffolds for Cardiac Tissue Engineering, Quentin Jallerat, John M. Szymanski, and Adam W. Feinberg

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Real time visualization and characterization of platelet deposition under flow onto clinically relevant opaque surfaces, Megan A. Jamiolkowski, Joshua R. Woolley, Marina V. Kameneva, James F. Antaki, and William R. Wagner

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Investigating developmental cardiovascular biomechanics and the origins of congenital heart defects., William J. Kowalski, Kerem Pekkan, Joseph P. Tinney, and Bradley Keller

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Left atrial ligation alters intracardiac flow patterns and the biomechanical landscape in the chick embryo., William J. Kowalski, Nikola C. Teslovich, Prahlad G. Menon, Joseph P. Tinney, Bradley B. Keller, and Kerem Pekkan

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Characterization of a reverse-phase perfluorocarbon emulsion for the pulmonary delivery of tobramycin., Ryan A. Orizondo, Charlene Irvin Babcock, Mario L. Fabiilli, Leonid Pavlovsky, J. Brian Fowlkes, John G. Younger, and Keith E. Cook

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Accurate diagnosis of thyroid follicular lesions from nuclear morphology using supervised learning., John A. Ozolek, Akif Burak Tosun, Wei Wang, Cheng Chen, Soheil Kolouri, Saurav Basu, Hu Huang, and Gustavo K. Rohde

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Shrink Wrapping Cells in a Defined Extracellular Matrix to Modulate the Chemo-Mechanical Microenvironment, Rachelle N. Palchesko, John M. Szymanski, Amrita Sahu, and Adam W. Feinberg

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Carnegie Mellon University bioimaging day 2014: Challenges and opportunities in digital pathology., Gustavo K. Rohde, John A. Ozolek, Anil V. Parwani, and Liron Pantanowitz

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Fabrication of freestanding alginate microfibers and microstructures for tissue engineering applications., John M. Szymanski and Adam W. Feinberg

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ECM protein nanofibers and nanostructures engineered using surface-initiated assembly., John M. Szymanski, Quentin Jallerat, and Adam W. Feinberg

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Outcomes of the ninth international conference on pediatric mechanical circulatory support systems and pediatric cardiopulmonary perfusion., Akif Ündar, Shigang Wang, David Palanzo, Bonnie Weaver, Kerem Pekkan, Mehmet Agirbasli, Jeffrey D. Zahn, Giovanni B. Luciani, J. Brian Clark, Ronald P. Wilson, Allen R. Kunselman, Shunji Sano, Emre Belli, William S. Pierce, and John L. Myers

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Simulation of Dilated Heart Failure with Continuous Flow Circulatory Support, Yajuan Wang, Natasha Logmanpour, Stijn Vandenberghe, Antonio Ferreira, Bradley Keller, John Gorcsan, and James F. Antaki

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A numerical study of blood flow using mixture theory., Wei-Tao Wu, Nadine Aubry, Mehrdad Massoudi, Jeongho Kim, and James F. Antaki

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Robust efficient estimation of heart rate pulse from video., Shuchang Xu, Lingyun Sun, and Gustavo K. Rohde

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Characterizaton of the Vessel Geometry, Flow Mechanics and Wall Shear Stress in the Great Arteries of Wildtype Prenatal Mouse, Choon Hwai Yap, Xiaoqin Liu, and Kerem Pekkan

Submissions from 2013

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Novel fenestration designs for controlled venous flow shunting in failing Fontans with systemic venous hypertension., Priti G. Albal, Prahlad G. Menon, William J. Kowalski, Akif Ündar, Riza Turkoz, and Kerem Pekkan

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Control of ventricular unloading using an electrocardiogram-synchronized Thoratec paracorporeal ventricular assist device, Raffael Amacher, Alberto Weber, Henriette Brinks, Shannon Axiak, Antonio Ferreira, Lino Guzzella, Thierry Carrel, James F. Antaki, and Stijn Vandenberghe

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Fabrication and in vivo thrombogenicity testing of nitric oxide generating artificial lungs., Kagya A. Amoako, Patrick J. Montoya, Terry C. Major, Ahmed B. Suhaib, Hitesh Handa, David O. Brant, Mark E. Meyerhoff, Robert H. Bartlett, and Keith E. Cook

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A vocabulary for the identification and delineation of teratoma tissue components in hematoxylin and eosin-stained samples., Ramamurthy Bhagavatula, Michael T. McCann, Matthew Fickus, Carlos A. Castro, John A. Ozolek, and Jelena Kovacevic

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Long-term animal model of venovenous extracorporeal membrane oxygenation with atrial septal defect as a bridge to lung transplantation., Daniele Camboni, Alvaro Rojas, Peter Sassalos, David Spurlock, Kelly L. Koch, Sarah Menchak, Jennifer Singleton, Erika Boothman, Jonathan W. Haft, Robert H. Bartlett, and Keith E. Cook

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A General System for Supervised Biomedical Image Segmentation, Cheng Chen

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A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching., Cheng Chen, Wei Wang, John A. Ozolek, and Gustavo K. Rohde

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High-speed three-dimensional characterization of fluid flows induced by micro-objects in deep microchannels, Chia-Yuan Chen and Kerem Pekkan

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Advanced Technologies for Engineering Tissue Mimetics, Tzahi Cohen-Karni and Tal Dvir

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Nanowire nanoelectronics: Building interfaces with tissue and cells at the natural scale of biology, Tzahi Cohen-Karni and Charles M. Lieber

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Electric impedance microflow cytometry for characterization of cell disease states., E Du, Sungjae Ha, Monica Diez-Silva, Ming Dao, Subra Suresh, and Anantha P. Chandrakasan

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Functional differences in engineered myocardium from embryonic stem cell-derived versus neonatal cardiomyocytes., Adam W. Feinberg, Crystal M. Ripplinger, Peter van der Meer, Sean P. Sheehy, Ibrahim Domian, Kenneth R. Chien, and Kevin Kit Parker

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A Hermetically Sealed, Fluid-Filled Surgical Enclosure for Microgravity, Jennifer A. Hayden, George M. Pantalos, James E. Burgess, and James F. Antaki

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Fontan conversion templates: patient-specific hemodynamic performance of the lateral tunnel versus the intraatrial conduit with fenestration., Haifa Hong, Onur Dur, Haibo Zhang, Zhongqun Zhu, Kerem Pekkan, and Jinfen Liu

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Quantification of vascular morphogenesis in the chick embryo and its relationship to the hemodynamic environment, William J. Kowalski

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Critical Transitions in Early Embryonic Aortic Arch Patterning and Hemodynamics, William J. Kowalski, Onur Dur, Yajuan Wang, Michael J. Patrick, Joseph P. Tinney, Bradley Keller, and Kerem Pekkan

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Slow DNA transport through nanopores in hafnium oxide membranes., Joseph Larkin, Robert Henley, David C. Bell, Tzahi Cohen-Karni, Jacob K Rosenstein, and Meni Wanunu

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Aortic Outflow Cannula Tip Design and Orientation Impacts Cerebral Perfusion During Pediatric Cardiopulmonary Bypass Procedures, Prahlad G. Menon, James F. Antaki, Akif Undar, and Kerem Pekkan

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Characterization of neonatal aortic cannula jet flow regimes for improved cardiopulmonary bypass., Prahlad G. Menon, Nikola C. Teslovich, Chia-Yuan Chen, Akif Undar, and Kerem Pekkan

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Presurgical evaluation of Fontan connection options for patients with apicocaval juxtaposition using computational fluid dynamics., Prahlad G. Menon, Masahiro Yoshida, and Kerem Pekkan

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Nanofiber Biomaterials, Rachelle N. Palchesko, Yan Sun, Ling Zhang, John M. Szymanski, Quentin Jallerat, and Adam W. Feinberg

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Computer modeling for the prediction of thoracic aortic stent graft collapse., Salvatore Pasta, Jae-Sung Cho, Onur Dur, Kerem Pekkan, and David A. Vorp

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Developmental Fetal Cardiovascular Biomechanics in the 21st Century: Another Tipping Point, Kerem Pekkan and Bradley Keller

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Use of a low-resistance compliant thoracic artificial lung in the pulmonary artery to pulmonary artery configuration., Christopher N. Scipione, Rebecca E. Schewe, Kelly L. Koch, Andrew W. Shaffer, Amit Iyengar, and Keith E. Cook

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Variability of computational fluid dynamics solutions for pressure and flow in a giant aneurysm: the ASME 2012 Summer Bioengineering Conference CFD Challenge., David A. Steinman, Yiemeng Hoi, Paul Fahy, Liam Morris, Michael T Walsh, Nicolas Aristokleous, Andreas S Anayiotos, Yannis Papaharilaou, Amirhossein Arzani, Shawn C Shadden, Philipp Berg, Gábor Janiga, Joris Bols, Patrick Segers, Neil W Bressloff, Merih Cibis, Frank H Gijsen, Salvatore Cito, Jordi Pallarés, Leonard D Browne, Jennifer A Costelloe, Adrian G Lynch, Joris Degroote, Jan Vierendeels, Wenyu Fu, Aike Qiao, Simona Hodis, David F Kallmes, Hardeep Kalsi, Quan Long, Vitaly O Kheyfets, Ender A Finol, Kenichi Kono, Adel M Malek, Alexandra Lauric, Prahlad G Menon, Kerem Pekkan, Mahdi Esmaily Moghadam, Alison L Marsden, Marie Oshima, Kengo Katagiri, Véronique Peiffer, Yumnah Mohamied, Spencer J Sherwin, Jens Schaller, Leonid Goubergrits, Gabriel Usera, Mariana Mendina, Kristian Valen-Sendstad, Damiaan F Habets, Jianping Xiang, Hui Meng, Yue Yu, George E Karniadakis, Nicholas Shaffer, and Francis Loth

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Optimizing the structure and contractility of engineered skeletal muscle thin films., Y. Sun, Rebecca M. Duffy, A. Lee, and Adam W. Feinberg

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Modeling and optimization of a MEMS membrane-based acoustic-wave biosensor, Jane E. Valentine

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A linear optimal transportation framework for quantifying and visualizing variations in sets of images., Wei Wang, Dejan Slepcev, Saurav Basu, John A. Ozolek, and Gustavo K. Rohde

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Total cavopulmonary connection in patients with apicocaval juxtaposition: optimal conduit route using preoperative angiogram and flow simulation., Masahiro Yoshida, Prahlad G. Menon, Constantinos Chrysostomou, Kerem Pekkan, Peter D. Wearden, Yoshihiro Oshima, Yutaka Okita, and Victor O. Morell

Submissions from 2012

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Hemodynamic design requirements for in-series thoracic artificial lung attachment in a model of pulmonary hypertension., Begum Akay, Julie A Foucher, Daniele Camboni, Kelly L. Koch, Ayushi Kawatra, and Keith E. Cook

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Toward the virtual cell: automated approaches to building models of subcellular organization "learned" from microscopy images., Taraz E. Buck, Jieyue Li, Gustavo K. Rohde, and Robert F. Murphy

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Time-resolved OCT-μPIV: a new microscopic PIV technique for noninvasive depth-resolved pulsatile flow profile acquisition, Chia-Yuan Chen, Prahlad G. Menon, William J. Kowalski, and Kerem Pekkan

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Remodeling of mechanical junctions and of microtubule-associated proteins accompany cardiac connexin43 lateralization., Halina S. Chkourko, Guadalupe Guerrero-Serna, Xianming Lin, Nedal Darwish, Joshua R. Pohlmann, Keith E. Cook, Jeffrey R. Martens, Eli Rothenberg, Hassan Musa, and Mario Delmar

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Synthetically encoded ultrashort-channel nanowire transistors for fast, pointlike cellular signal detection., Tzahi Cohen-Karni, Didier Casanova, James F. Cahoon, Quan Qing, David C. Bell, and Charles M. Lieber

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Nanocomposite gold-silk nanofibers., Tzahi Cohen-Karni, Kyung Jae Jeong, Jonathan H. Tsui, Gally Reznor, Mirela Mustata, Meni Wanunu, Adam Graham, Carolyn Marks, David C. Bell, Robert Langer, and Daniel S. Kohane

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The smartest materials: the future of nanoelectronics in medicine., Tzahi Cohen-Karni, Robert Langer, and Daniel S. Kohane

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Cannulation strategy for aortic arch reconstruction using deep hypothermic circulatory arrest., Diane de Zélicourt, Georgia Institute of Technology, Marc Horner, Kerem Pekkan, Kirk R. Kanter, and Ajit P Yoganathan

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Intracellular recordings of action potentials by an extracellular nanoscale field-effect transistor., Xiaojie Duan, Ruixuan Gao, Ping Xie, Tzahi Cohen-Karni, Quan Qing, Hwan Sung Choe, Bozhi Tian, Xiaocheng Jiang, and Charles M. Lieber

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Engineered tissue grafts: opportunities and challenges in regenerative medicine., Adam W. Feinberg

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Controlling the contractile strength of engineered cardiac muscle by hierarchal tissue architecture., Adam W. Feinberg, Patrick W. Alford, Hongwei Jin, Crystal M. Ripplinger, Andreas A. Werdich, Sean P. Sheehy, Anna Grosberg, and Kevin Kit Parker

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In vitro hemodynamic evaluation of ventricular suction conditions of the EVAHEART ventricular assist pump., Antonio Ferreira, Yih-Choung Yu, Dorian K. Arnold, Stijn Vandenberghe, Jonathan Grashow, Tomoya Kitano, David Borzelleca, and James F. Antaki

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Outside looking in: nanotube transistor intracellular sensors., Ruixuan Gao, Steffen Strehle, Bozhi Tian, Tzahi Cohen-Karni, Ping Xie, Xiaojie Duan, Quan Qing, and Charles M. Lieber

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Altered cell mechanics from the inside: dispersed single wall carbon nanotubes integrate with and restructure actin., Brian D. Holt, Hengameh Shams, Travis A. Horst, Saurav Basu, Andrew D. Rape, Yu-Li Wang, Gustavo K. Rohde, Mohammad R. K. Mofrad, Mohammad F. Islam, and Kris N. Dahl

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The Role of Porous Media in Modeling Fluid Flow Within Hollow Fiber Membranes of the Total Artificial Lung, Khalil M. Khanafer, Keith E. Cook, and Alia Marafie

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Removal of malaria-infected red blood cells using magnetic cell separators: A computational study., Jeongho Kim, Mehrdad Massoudi, James F. Antaki, and Alberto Gandini

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Computational hemodynamic optimization predicts dominant aortic arch selection is driven by embryonic outflow tract orientation in the chick embryo., William J. Kowalski, Nikola C. Teslovich, Onur Dur, Bradley B. Keller, and Kerem Pekkan

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High-throughput arrays for rapid characterization of solution-processable transparent conducting electrodes., Stephen Kustra, Haosheng Wu, Saurav Basu, Gustavo K. Rohde, and Christopher J. Bettinger

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Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines., Jieyue Li, Aabid Shariff, Mikaela Wiking, Emma Lundberg, Gustavo K. Rohde, and Robert F. Murphy

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Modeling and numerical simulation of blood flow using the Theory of Interacting Continua., Mehrdad Massoudi, Jeongho Kim, and James F. Antaki

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A tissue-engineered jellyfish with biomimetic propulsion., Janna C. Nawroth, Hyungsuk Lee, Adam W. Feinberg, Crystal M. Ripplinger, Megan L. McCain, Anna Grosberg, John O. Dabiri, and Kevin Kit Parker

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Development of polydimethylsiloxane substrates with tunable elastic modulus to study cell mechanobiology in muscle and nerve., Rachelle N. Palchesko, Ling Zhang, Yan Sun, and Adam W. Feinberg

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A low mortality model of chronic pulmonary hypertension in sheep., Joshua R. Pohlmann, Begum Akay, Daniele Camboni, Kelly L. Koch, Benjamin M Mervak, and Keith E. Cook

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Three-dimensional microfiber devices that mimic physiological environments to probe cell mechanics and signaling., Warren C. Ruder, Erica D. Pratt, Sasha H. Bakhru, Metin Sitti, Stefan Zappe, Chao-Min Cheng, James F. Antaki, and Philip LeDuc

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Calcium signaling is gated by a mechanical threshold in three-dimensional environments, Warren C. Ruder, Erica D. Pratt, Nailah Z. D. Brady, David A. LaVan, Philip LeDuc, and James F. Antaki

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Design and in vitro assessment of an improved, low-resistance compliant thoracic artificial lung., Rebecca E. Schewe, Khalil M. Khanafer, Aarthi Arab, Jeffrey A. Mitchell, David J. Skoog, and Keith E. Cook

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Thoracic artificial lung impedance studies using computational fluid dynamics and in vitro models., Rebecca E. Schewe, Khalil M. Khanafer, Ryan A. Orizondo, and Keith E. Cook

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In-parallel attachment of a low-resistance compliant thoracic artificial lung under rest and simulated exercise., Rebecca E. Schewe, Christopher N. Scipione, Kelly L. Koch, and Keith E. Cook

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An Agent-based Model for Evaluating Cellular Mechanisms of Bone Remodeling, Lyndsey J. Schutte

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Visualization of flow structures in Fontan patients using 3-dimensional phase contrast magnetic resonance imaging., Kartik S. Sundareswaran, Christopher M. Haggerty, Diane de Zélicourt, Lakshmi P. Dasi, Kerem Pekkan, David H. Frakes, Andrew J. Powell, Kirk R. Kanter, Mark A. Fogel, and Ajit P Yoganathan

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Sensor-Based Assessment of the Quality of Human Motion During Therapeutic Exercise, Portia E. Taylor

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Decision tree for adjuvant right ventricular support in patients receiving a left ventricular assist device., Yajuan Wang, Marc A. Simon, Pramod Bonde, Bronwyn U. Harris, Jeffrey J. Teuteberg, Robert L. Kormos, and James F. Antaki